Publications

Computational Biomedicine Group

Selected Publications

omnideconv: a unifying framework for using and benchmarking single-cell-informed deconvolution of bulk RNA-seq data

Dietrich A*, Merotto L*, et al. Genome Biology 27(1):6 (2026).

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NovumRNA: Accurate prediction of non-canonical tumor antigens from RNA sequencing data

Ausserhofer M. et al. iScience 28(10):113448 (2025).

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Multimodal analysis unveils tumor microenvironment heterogeneity linked to immune activity and evasion

Lapuente-Santana O., Sturm G. et al. iScience 27(8), 110529 (2024).

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Interpretable systems biomarkers predict response to immune-checkpoint inhibitors

Lapuente-Santana O. et al. Patterns 2(8), 100293 (2021).

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Next-generation computational tools for interrogating cancer immunity.

Finotello F. et al. Nature Reviews Genetics 20(12), 724–746 (2019).

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Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data

Finotello F. et al. Genome Medicine 11(1), 34 (2019).

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Pan-cancer Immunogenomic Analyses Reveal Genotype-Immunophenotype Relationships and Predictors of Response to Checkpoint Blockade

Charoentong P.*, Finotello F*, Angelova M.* et al. Cell Reports 18(1), 248-262 (2017).

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