
omnideconv
Ecosystem of tools and resources for single-cell-informed deconvolution of bulk RNA-seq data
Code and documentationComputational Biomedicine Group
Ecosystem of tools and resources for single-cell-informed deconvolution of bulk RNA-seq data
Code and documentationR package for the deconvolution of tissue architecture from spatial transcriptomics data
Code and documentationBias-aware simulator of pseudo-bulk RNA-seq data with variable cell-type composition
Code and documentationR package for unified access to computational methods for estimating immune cell fractions from bulk RNA sequencing data
Code and documentationNext-flow pipeline for the computational prediction of non-canonical neoantigens
Code and documentationPython package to perform robust cell-type deconvolution informed by single-cell RNA-seq data
Code and documentationComputational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data via deconvolution
Code and documentationScalable python-toolkit to analyse T cell receptor (TCR) or B cell receptor (BCR) repertoires from single-cell RNA sequencing (scRNA-seq) data
Code and documentationComprehensive and fully-automated bioinformatic pipeline to predict tumor neoantigens from raw DNA and RNA sequencing data
Code and documentationUser-friendly pipeline for the prediction of fusion neoantigens from tumor RNA sequencing data
Code and documentation